A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4242352



Internal ID20092386
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr15:88804365..88822049hg38UCSC Ensembl
chr15:89347596..89365280hg19UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg3817685
hg1917685
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15826990
Samples
Known GenesACAN
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4242352
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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