A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4233739



Internal ID20433293
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:52529763..52537634hg38UCSC Ensembl
chr16:52563675..52571546hg19UCSC Ensembl
Cytoband16q12.1
Allele length
AssemblyAllele length
hg387872
hg197872
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15831090
Samples
Known GenesTOX3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4233739
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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