A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4228838



Internal ID20429840
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr13:96775082..96782319hg38UCSC Ensembl
chr13:97427336..97434573hg19UCSC Ensembl
Cytoband13q32.1
Allele length
AssemblyAllele length
hg387238
hg197238
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15818353
Samples
Known GenesHS6ST3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4228838
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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