A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4208741



Internal ID20415503
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:10984400..10989268hg38UCSC Ensembl
chr12:11136999..11141867hg19UCSC Ensembl
Cytoband12p13.2
Allele length
AssemblyAllele length
hg384869
hg194869
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15806339
Samples
Known GenesPRH1-PRR4, TAS2R50
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4208741
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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