A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4205704



Internal ID20413291
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:18647363..18659200hg38UCSC Ensembl
chr12:18800297..18812134hg19UCSC Ensembl
Cytoband12p12.3
Allele length
AssemblyAllele length
hg3811838
hg1911838
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15808155
Samples
Known GenesPIK3C2G
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4205704
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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