A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4204354



Internal ID20412309
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:32480793..32537146hg38UCSC Ensembl
chr12:32633727..32690080hg19UCSC Ensembl
Cytoband12p11.21
Allele length
AssemblyAllele length
hg3856354
hg1956354
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15807083
Samples
Known GenesFGD4
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4204354
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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