A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4202674



Internal ID20064415
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:70564280..70576054hg38UCSC Ensembl
chr11:70410385..70422159hg19UCSC Ensembl
Cytoband11q13.4
Allele length
AssemblyAllele length
hg3811775
hg1911775
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15948031
Samples
Known GenesSHANK2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4202674
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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