A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4202545



Internal ID20411007
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:57938840..57944250hg38UCSC Ensembl
chr12:58332623..58338033hg19UCSC Ensembl
Cytoband12q14.1
Allele length
AssemblyAllele length
hg385411
hg195411
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15811319
Samples
Known GenesXRCC6BP1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4202545
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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