A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4202421



Internal ID20064235
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:72089954..72117954hg38UCSC Ensembl
chr11:71801000..71829000hg19UCSC Ensembl
Cytoband11q13.4
Allele length
AssemblyAllele length
hg3828001
hg1928001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15952997
Samples
Known GenesANAPC15, LAMTOR1, LRTOMT
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4202421
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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