A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4200458



Internal ID20409517
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:55490216..55503216hg38UCSC Ensembl
chr12:55884000..55897000hg19UCSC Ensembl
Cytoband12q13.2
Allele length
AssemblyAllele length
hg3813001
hg1913001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15953147
Samples
Known GenesOR6C68
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4200458
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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