A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4198640



Internal ID20061497
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:61957888..61963045hg38UCSC Ensembl
chr11:61725360..61730517hg19UCSC Ensembl
Cytoband11q12.3
Allele length
AssemblyAllele length
hg385158
hg195158
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15803016
Samples
Known GenesBEST1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4198640
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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