A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4198537



Internal ID20408113
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:39882029..39927782hg38UCSC Ensembl
chr12:40275831..40321584hg19UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg3845754
hg1945754
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15809649
Samples
Known GenesSLC2A13
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4198537
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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