A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4196813



Internal ID20060186
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:56674832..56683617hg38UCSC Ensembl
chr12:57068616..57077401hg19UCSC Ensembl
Cytoband12q13.3
Allele length
AssemblyAllele length
hg388786
hg198786
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15811267
Samples
Known GenesPTGES3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4196813
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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