A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4195627



Internal ID20406002
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:12354221..12358930hg38UCSC Ensembl
chr11:12375768..12380477hg19UCSC Ensembl
Cytoband11p15.3
Allele length
AssemblyAllele length
hg384710
hg194710
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv331n166
Supporting Variantsnssv15800933
Samples
Known GenesMICALCL
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4195627
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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