A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4193477



Internal ID20057758
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:55354963..55365359hg38UCSC Ensembl
chr12:55748747..55759143hg19UCSC Ensembl
Cytoband12q13.2
Allele length
AssemblyAllele length
hg3810397
hg1910397
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15809401
Samples
Known GenesOR6C75
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4193477
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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