A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4189240



Internal ID20401366
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:37221379..37385776hg38UCSC Ensembl
chr10:37510307..37674704hg19UCSC Ensembl
Cytoband10p11.21
Allele length
AssemblyAllele length
hg38164398
hg19164398
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15794872
Samples
Known GenesANKRD30A, LINC00993
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4189240
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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