A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4178252



Internal ID20046842
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:61412661..61440381hg38UCSC Ensembl
chr10:63172419..63200139hg19UCSC Ensembl
Cytoband10q21.2
Allele length
AssemblyAllele length
hg3827721
hg1927721
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15795453
Samples
Known GenesTMEM26
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4178252
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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