A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4175169



Internal ID20391342
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:112449524..112453775hg38UCSC Ensembl
chr9:115211804..115216055hg19UCSC Ensembl
Cytoband9q32
Allele length
AssemblyAllele length
hg384252
hg194252
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15938891
Samples
Known GenesHSDL2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4175169
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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