A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4172298



Internal ID20389305
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:41624332..41629270hg38UCSC Ensembl
chr8:41481851..41486789hg19UCSC Ensembl
Cytoband8p11.21
Allele length
AssemblyAllele length
hg384939
hg194939
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15926327
Samples
Known GenesAGPAT6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4172298
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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