A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4138913



Internal ID20365043
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:3796836..3816840hg38UCSC Ensembl
chr7:3836468..3856472hg19UCSC Ensembl
Cytoband7p22.2
Allele length
AssemblyAllele length
hg3820005
hg1920005
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15917822
Samples
Known GenesSDK1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4138913
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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