A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4133542



Internal ID20361158
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:110185638..110187834hg38UCSC Ensembl
chr6:110506841..110509037hg19UCSC Ensembl
Cytoband6q21
Allele length
AssemblyAllele length
hg382197
hg192197
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15914220
Samples
Known GenesCDC40
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4133542
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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