A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4130708



Internal ID20012444
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:134883098..134993652hg38UCSC Ensembl
chr5:134218788..134329342hg19UCSC Ensembl
Cytoband5q31.1
Allele length
AssemblyAllele length
hg38110555
hg19110555
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15976431
Samples
Known GenesCATSPER3, MIR4461, PCBD2, TXNDC15
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4130708
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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