A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4125529



Internal ID20355458
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:11351711..11356518hg38UCSC Ensembl
chr5:11351823..11356630hg19UCSC Ensembl
Cytoband5p15.2
Allele length
AssemblyAllele length
hg384808
hg194808
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1945n166
Supporting Variantsnssv15899928
Samples
Known GenesCTNND2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4125529
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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