A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4118097



Internal ID20003577
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:26367772..26442772hg38UCSC Ensembl
chr6:26368000..26443000hg19UCSC Ensembl
Cytoband6p22.2
Allele length
AssemblyAllele length
hg3875001
hg1975001
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15907862
Samples
Known GenesBTN2A2, BTN2A3P, BTN3A1, BTN3A2, BTN3A3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4118097
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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