A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4115469



Internal ID20001737
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:180684786..180791724hg38UCSC Ensembl
chr5:180111786..180218724hg19UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg38106939
hg19106939
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15975451
Samples
Known GenesMGAT1, OR2Y1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4115469
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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