A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4114356



Internal ID20347640
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:69534173..69686173hg38UCSC Ensembl
chr5:68830000..68982000hg19UCSC Ensembl
Cytoband5q13.2
Allele length
AssemblyAllele length
hg38152001
hg19152001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15976864
Samples
Known GenesGTF2H2C, GTF2H2D, GUSBP3, LOC100272216, OCLN
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4114356
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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