A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4112840



Internal ID20346558
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:161582280..161719855hg38UCSC Ensembl
chr5:161009286..161146861hg19UCSC Ensembl
Cytoband5q34
Allele length
AssemblyAllele length
hg38137576
hg19137576
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15907517
Samples
Known GenesGABRA6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4112840
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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