A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4111666



Internal ID19999022
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:156689939..156693988hg38UCSC Ensembl
chr3:156407728..156411777hg19UCSC Ensembl
Cytoband3q25.31
Allele length
AssemblyAllele length
hg384050
hg194050
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15971667
Samples
Known GenesTIPARP
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4111666
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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