A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4107440



Internal ID20342573
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:158808767..158814506hg38UCSC Ensembl
chr4:159729919..159735658hg19UCSC Ensembl
Cytoband4q32.1
Allele length
AssemblyAllele length
hg385740
hg195740
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15896287
Samples
Known GenesFNIP2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4107440
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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