A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4105400



Internal ID20341078
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:169955035..169956674hg38UCSC Ensembl
chr3:169672823..169674462hg19UCSC Ensembl
Cytoband3q26.2
Allele length
AssemblyAllele length
hg381640
hg191640
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15885034
Samples
Known GenesLOC100128164
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4105400
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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