A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4103598



Internal ID20339708
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:157237606..157249531hg38UCSC Ensembl
chr4:158158758..158170683hg19UCSC Ensembl
Cytoband4q32.1
Allele length
AssemblyAllele length
hg3811926
hg1911926
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15896600
Samples
Known GenesGRIA2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4103598
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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