A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4103353



Internal ID19992827
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:184050912..184055286hg38UCSC Ensembl
chr3:183768700..183773074hg19UCSC Ensembl
Cytoband3q27.1
Allele length
AssemblyAllele length
hg384375
hg194375
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1730n166
Supporting Variantsnssv15888523
Samples
Known GenesHTR3C
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4103353
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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