A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4103172



Internal ID20339379
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:95415003..95416361hg38UCSC Ensembl
chr4:96336154..96337512hg19UCSC Ensembl
Cytoband4q22.3
Allele length
AssemblyAllele length
hg381359
hg191359
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15892776
Samples
Known GenesUNC5C
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4103172
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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