A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4101900



Internal ID20338442
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:3249857..3256696hg38UCSC Ensembl
chr4:3251584..3258423hg19UCSC Ensembl
Cytoband4p16.3
Allele length
AssemblyAllele length
hg386840
hg196840
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15887866
Samples
Known GenesMSANTD1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4101900
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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