A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4101442



Internal ID20338091
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:136118158..136129658hg38UCSC Ensembl
chr3:135837000..135848500hg19UCSC Ensembl
Cytoband3q22.3
Allele length
AssemblyAllele length
hg3811501
hg1911501
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15884599
Samples
Known GenesPPP2R3A
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4101442
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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