A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4098771



Internal ID19989461
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:151299354..151307428hg38UCSC Ensembl
chr3:151017142..151025216hg19UCSC Ensembl
Cytoband3q25.1
Allele length
AssemblyAllele length
hg388075
hg198075
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15883696
Samples
Known GenesGPR87, MED12L
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4098771
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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