A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4098582



Internal ID20336001
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:97433140..97438062hg38UCSC Ensembl
chr4:98354291..98359213hg19UCSC Ensembl
Cytoband4q22.3
Allele length
AssemblyAllele length
hg384923
hg194923
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15893432
Samples
Known GenesSTPG2-AS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4098582
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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