A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4098139



Internal ID20335665
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:156897663..156898570hg38UCSC Ensembl
chr4:157818815..157819722hg19UCSC Ensembl
Cytoband4q32.1
Allele length
AssemblyAllele length
hg38908
hg19908
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15896260
Samples
Known GenesPDGFC
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4098139
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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