A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4095819



Internal ID20333942
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:196802971..196917382hg38UCSC Ensembl
chr3:196529842..196644253hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38114412
hg19114412
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1749n166
Supporting Variantsnssv15970517
Samples
Known GenesPAK2, SENP5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4095819
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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