A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4090284



Internal ID19983107
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:232712895..232720213hg38UCSC Ensembl
chr2:233577605..233584923hg19UCSC Ensembl
Cytoband2q37.1
Allele length
AssemblyAllele length
hg387319
hg197319
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15877715
Samples
Known GenesGIGYF2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4090284
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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