A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4085922



Internal ID20326620
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:157919488..158055488hg38UCSC Ensembl
chr2:158776000..158912000hg19UCSC Ensembl
Cytoband2q24.1
Allele length
AssemblyAllele length
hg38136001
hg19136001
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15970127
Samples
Known GenesUPP2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4085922
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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