A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4085283



Internal ID19979470
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:233253408..233367348hg38UCSC Ensembl
chr2:234162054..234275994hg19UCSC Ensembl
Cytoband2q37.1
Allele length
AssemblyAllele length
hg38113941
hg19113941
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15969109
Samples
Known GenesATG16L1, DGKD, SAG, SCARNA5, SCARNA6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4085283
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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