A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4084625



Internal ID20325669
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:23901044..23906413hg38UCSC Ensembl
chr3:23942535..23947904hg19UCSC Ensembl
Cytoband3p24.2
Allele length
AssemblyAllele length
hg385370
hg195370
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15879410
Samples
Known GenesNKIRAS1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4084625
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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