A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4080147



Internal ID20322370
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:192140468..192142101hg38UCSC Ensembl
chr2:193005194..193006827hg19UCSC Ensembl
Cytoband2q32.3
Allele length
AssemblyAllele length
hg381634
hg191634
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15876512
Samples
Known GenesTMEFF2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4080147
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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