A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4079596



Internal ID20321973
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:135210518..135221021hg38UCSC Ensembl
chr2:135968088..135978591hg19UCSC Ensembl
Cytoband2q21.3
Allele length
AssemblyAllele length
hg3810504
hg1910504
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1314n166
Supporting Variantsnssv15871300
Samples
Known GenesZRANB3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4079596
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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