A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4079317



Internal ID19975088
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:137941915..137973666hg38UCSC Ensembl
chr2:138699485..138731236hg19UCSC Ensembl
Cytoband2q22.1
Allele length
AssemblyAllele length
hg3831752
hg1931752
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15969464
Samples
Known GenesHNMT
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4079317
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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