A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4072966



Internal ID20317073
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:200370365..200376956hg38UCSC Ensembl
chr2:201235088..201241679hg19UCSC Ensembl
Cytoband2q33.1
Allele length
AssemblyAllele length
hg386592
hg196592
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15874450
Samples
Known GenesSPATS2L
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4072966
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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