A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4071985



Internal ID19969655
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:158292139..158301454hg38UCSC Ensembl
chr1:158261929..158271244hg19UCSC Ensembl
Cytoband1q23.1
Allele length
AssemblyAllele length
hg389316
hg199316
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15855760
Samples
Known GenesCD1C
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4071985
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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