A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4069737



Internal ID19968032
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:53841886..53856012hg38UCSC Ensembl
chr2:54069023..54083149hg19UCSC Ensembl
Cytoband2p16.2
Allele length
AssemblyAllele length
hg3814127
hg1914127
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15867655
Samples
Known GenesGPR75, GPR75-ASB3, MIR3682
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4069737
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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