A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4066113



Internal ID20312099
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:84456612..84458271hg38UCSC Ensembl
chr2:84683736..84685395hg19UCSC Ensembl
Cytoband2p11.2
Allele length
AssemblyAllele length
hg381660
hg191660
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15867836
Samples
Known GenesSUCLG1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4066113
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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